From 956698c3f90a2b890fdd608d34f127bb36fb537e Mon Sep 17 00:00:00 2001
From: chausman <chausman@nrao.edu>
Date: Thu, 8 Jul 2021 13:13:51 -0600
Subject: [PATCH] Revert "WS-508: ingest_envoy structure and integration"
This reverts commit 4af90a056b7555ba4701c5d6bb43eb0721615090.
---
.../pexable/conveyor/test/test_conveyor.py | 11 +-
.../ingest_envoy/ingest_envoy/ingest.py | 72 --------
.../ingest_envoy/ingest_envoy/launchers.py | 50 ------
.../pexable/ingest_envoy/ingest_envoy/main.py | 2 +
.../ingest_envoy/ingest_envoy/solicitor.py | 37 ----
.../executables/pexable/ingest_envoy/setup.py | 2 +-
.../test/input_files/test-metadata.json | 14 --
.../pexable/ingest_envoy/test/test_ingest.py | 61 -------
.../ingest_envoy/test/test_launchers.py | 53 ------
.../ingest_envoy/test/test_solicitor.py | 51 ------
docker.properties | 6 -
...add_workflow_creation_time_to_metadata_.py | 162 ------------------
12 files changed, 8 insertions(+), 513 deletions(-)
delete mode 100644 apps/cli/executables/pexable/ingest_envoy/ingest_envoy/ingest.py
delete mode 100644 apps/cli/executables/pexable/ingest_envoy/ingest_envoy/launchers.py
create mode 100644 apps/cli/executables/pexable/ingest_envoy/ingest_envoy/main.py
delete mode 100644 apps/cli/executables/pexable/ingest_envoy/ingest_envoy/solicitor.py
delete mode 100644 apps/cli/executables/pexable/ingest_envoy/test/input_files/test-metadata.json
delete mode 100644 apps/cli/executables/pexable/ingest_envoy/test/test_ingest.py
delete mode 100644 apps/cli/executables/pexable/ingest_envoy/test/test_launchers.py
delete mode 100644 apps/cli/executables/pexable/ingest_envoy/test/test_solicitor.py
delete mode 100644 schema/versions/a7c2b4682aae_add_workflow_creation_time_to_metadata_.py
diff --git a/apps/cli/executables/pexable/conveyor/test/test_conveyor.py b/apps/cli/executables/pexable/conveyor/test/test_conveyor.py
index 1794a37a3..ed4c83033 100644
--- a/apps/cli/executables/pexable/conveyor/test/test_conveyor.py
+++ b/apps/cli/executables/pexable/conveyor/test/test_conveyor.py
@@ -5,6 +5,8 @@ import argparse
from unittest.mock import patch, MagicMock
import conveyor.conveyor as con
+from conveyor.deliver import DeliveryConveyor
+from conveyor.retrieve import RetrievalConveyor
expected_settings = {
"qa_delivery_area": "/lustre/aoc/cluster/pipeline/docker/workspaces/qa2",
@@ -24,17 +26,14 @@ class TestConveyor:
settings = con._get_settings("test/test.json")
assert settings["qa_delivery_area"] == expected_settings["qa_delivery_area"]
assert settings["weblog_cache_area"] == expected_settings["weblog_cache_area"]
- assert (
- settings["workspaces_lustre_root_dir"]
- == expected_settings["workspaces_lustre_root_dir"]
- )
+ assert settings["workspaces_lustre_root_dir"] == expected_settings["workspaces_lustre_root_dir"]
# mock calls to cwd and count
assert cwd.call_count == 2
assert settings["destination_dir"] == expected_settings["destination_dir"]
assert settings["destination_subdir"] == expected_settings["destination_subdir"]
def test_main_deliver(self):
- args.deliver = ["test/test.json"]
+ args.deliver = ['test/test.json']
with patch("argparse.ArgumentParser.parse_args", MagicMock(return_value=args)) as mock_args:
assert args.deliver[0] == "test/test.json"
@@ -46,7 +45,7 @@ class TestConveyor:
args.deliver = None
def test_main_retrieve(self):
- args.retrieve = ["test/test.json"]
+ args.retrieve = ['test/test.json']
with patch("argparse.ArgumentParser.parse_args", MagicMock(return_value=args)) as mock_args:
with patch("conveyor.retrieve.RetrievalConveyor.convey") as ret_convey:
diff --git a/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/ingest.py b/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/ingest.py
deleted file mode 100644
index 970a38468..000000000
--- a/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/ingest.py
+++ /dev/null
@@ -1,72 +0,0 @@
-import argparse
-import logging
-import sys
-
-from pycapo import CapoConfig
-
-from ingest_envoy.launchers import IngestCalibrationLauncher
-from ingest_envoy.solicitor import Solicitor
-
-"""
-Setup and Launch ingestion via Workspaces
-"""
-
-logger = logging.getLogger("ingest_envoy")
-logger.setLevel(logging.INFO)
-logger.addHandler(logging.StreamHandler(sys.stdout))
-
-
-def _get_settings(filename: str) -> dict:
- ingestion_settings = CapoConfig().settings("edu.nrao.archive.workspaces.IngestionSettings")
- staging_root_dir = ingestion_settings.stagingDirectory
- storage_root_dir = ingestion_settings.storageDirectory
-
- parameters = Solicitor(filename).solicit_parameters()
-
- parameters["staging_area"] = staging_root_dir
- parameters["storage_area"] = storage_root_dir
-
- return parameters
-
-
-def arg_parser() -> argparse.ArgumentParser:
- parser = argparse.ArgumentParser(
- description="Workspaces Ingestion handler", formatter_class=argparse.RawTextHelpFormatter
- )
- parser.add_argument(
- "--calibration",
- nargs=1,
- action="store",
- required=False,
- help="run ingestion for a calibration product",
- )
- parser.add_argument(
- "--image",
- nargs=1,
- action="store",
- required=False,
- help="run ingestion for an image product (anticipated functionality)",
- )
- return parser
-
-
-def check_ingest_type(args_type: str, parameters: dict) -> bool:
- if args_type in parameters["workflowName"]:
- return True
-
- return False
-
-
-def main():
- args = arg_parser().parse_args()
-
- if args.calibration is not None:
- arg_type = "calibration"
- parameters = _get_settings(args.calibration[0])
-
- if check_ingest_type(args_type=arg_type, parameters=parameters):
- IngestCalibrationLauncher(parameters).launch_ingestion()
- else:
- logger.error(
- f"ERROR: The workflow request to be ingested does not match specified ingestion type {type}."
- )
diff --git a/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/launchers.py b/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/launchers.py
deleted file mode 100644
index 16c845344..000000000
--- a/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/launchers.py
+++ /dev/null
@@ -1,50 +0,0 @@
-import logging
-import subprocess
-import sys
-
-from ingest_envoy.ingestion_manifest import IngestionManifest
-from ingest_envoy.interfaces import IngestLauncherIF
-
-
-class IngestCalibrationLauncher(IngestLauncherIF):
- def __init__(self, parameters: dict):
- self.logger = logging.getLogger("ingest_envoy")
- self.ingestion_type = "calibration"
- self.parameters = parameters
- self.staging_source_dir = (
- self.parameters["staging_area"] + "/" + self.parameters["workflowDir"]
- )
-
- def launch_ingestion(self):
- self.prepare_for_ingest()
- self.run_ingest()
-
- def run_ingest(self):
- subprocess.run(
- ["./ingest", "--json", self.staging_source_dir],
- stdout=sys.stdout,
- stderr=sys.stderr,
- )
-
- def prepare_for_ingest(self):
- # 1. run collection script to create calibration tarfile
- self.run_collection_script()
-
- # 2. create ingestion manifest
- self.create_manifest()
-
- def run_collection_script(self):
- workflow_dir = self.parameters["workflowDir"]
- sdm_id = self.parameters["sdmId"]
- cal_processing_datetime = self.parameters["processingStart"]
- # run script
- subprocess.run(
- ["./calibration-table-collector.sh", workflow_dir, sdm_id, cal_processing_datetime],
- stdout=sys.stdout,
- stderr=sys.stderr,
- )
-
- def create_manifest(self):
- spl = self.parameters["spl"]
-
- IngestionManifest(self.staging_source_dir, self.ingestion_type, spl).create()
diff --git a/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/main.py b/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/main.py
new file mode 100644
index 000000000..ccd65ac67
--- /dev/null
+++ b/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/main.py
@@ -0,0 +1,2 @@
+def main():
+ print("Hello, world!")
\ No newline at end of file
diff --git a/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/solicitor.py b/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/solicitor.py
deleted file mode 100644
index 801cea22f..000000000
--- a/apps/cli/executables/pexable/ingest_envoy/ingest_envoy/solicitor.py
+++ /dev/null
@@ -1,37 +0,0 @@
-"""
-Solicitor: uses metadata.json to determine input parameters for ingestion
-"""
-import json
-import pathlib
-
-
-class Solicitor:
- def __init__(self, filename: str):
- self.filename = filename
- self.metadata = self.solicit_contents()
-
- def solicit_contents(self) -> dict:
- with open(self.filename) as file:
- metadata = json.loads(file.read())
- return metadata
-
- def solicit_workflow_directory_name(self):
- destination_path = pathlib.Path(self.metadata["destinationDirectory"])
- return destination_path.stem
-
- def solicit_processing_creation_time(self):
- # incoming datetime: 2021-07-06T21:50:48
- # transformation for NGAS friendliness: 2021_07_06T21_50_48
- creation_time = self.metadata["creationTime"].replace("-", "_").replace(":", "_")
- return creation_time
-
- def solicit_parameters(self):
- metadata = self.solicit_contents()
- return {
- "sdmId": metadata["fileSetIds"],
- "workflowName": metadata["workflowName"],
- "spl": metadata["productLocator"],
- "processingStart": self.solicit_processing_creation_time(),
- "destinationDir": metadata["destinationDirectory"],
- "workflowDir": self.solicit_workflow_directory_name(),
- }
diff --git a/apps/cli/executables/pexable/ingest_envoy/setup.py b/apps/cli/executables/pexable/ingest_envoy/setup.py
index 5a0bc2654..f6516734b 100644
--- a/apps/cli/executables/pexable/ingest_envoy/setup.py
+++ b/apps/cli/executables/pexable/ingest_envoy/setup.py
@@ -25,5 +25,5 @@ setup(
keywords=[],
packages=find_packages(),
classifiers=["Programming Language :: Python :: 3.8"],
- entry_points={"console_scripts": ["ingest_envoy = ingest_envoy.ingest:main"]},
+ entry_points={"console_scripts": ["ingest_envoy = ingest_envoy.main:main"]},
)
diff --git a/apps/cli/executables/pexable/ingest_envoy/test/input_files/test-metadata.json b/apps/cli/executables/pexable/ingest_envoy/test/input_files/test-metadata.json
deleted file mode 100644
index 82782d96a..000000000
--- a/apps/cli/executables/pexable/ingest_envoy/test/input_files/test-metadata.json
+++ /dev/null
@@ -1,14 +0,0 @@
-{
- "fileSetIds": "16B-069_sb32814386_1_001.57685.66193635417",
- "workflowName": "std_calibration",
- "systemId": "2",
- "creationTime": "2021-07-06T21:50:48",
- "productLocator": "uid://evla/execblock/48ba4c9d-d7c7-4a8f-9803-1115cd52459b",
- "projectMetadata": {
- "projectCode": "16B-069",
- "title": "JVLA monitoring of an in-progress extreme scattering event",
- "startTime": "57685.661952546296",
- "observer": "Keith Bannister"
- },
- "destinationDirectory": "/lustre/aoc/cluster/pipeline/docker/workspaces/spool/tmp576dknjp"
-}
diff --git a/apps/cli/executables/pexable/ingest_envoy/test/test_ingest.py b/apps/cli/executables/pexable/ingest_envoy/test/test_ingest.py
deleted file mode 100644
index 9243bf5e3..000000000
--- a/apps/cli/executables/pexable/ingest_envoy/test/test_ingest.py
+++ /dev/null
@@ -1,61 +0,0 @@
-"""
-Tests for ingest_envoy.ingest
-"""
-import argparse
-from unittest.mock import patch, MagicMock
-
-import ingest_envoy.ingest as ingest
-
-expected_settings = {
- "sdmId": "16B-069_sb32814386_1_001.57685.66193635417",
- "workflowName": "std_calibration",
- "spl": "uid://evla/execblock/48ba4c9d-d7c7-4a8f-9803-1115cd52459b",
- "processingStart": "2021_07_06T21_50_48",
- "destinationDir": "/lustre/aoc/cluster/pipeline/docker/workspaces/spool/tmp576dknjp",
- "workflowDir": "tmp576dknjp",
- "staging_area": "/lustre/aoc/cluster/pipeline/docker/workspaces/staging",
- "storage_area": "/lustre/aoc/cluster/pipeline/docker/workspaces/storage",
-}
-
-args = argparse.Namespace
-filename = "test/input_files/test-metadata.json"
-
-
-class TestIngest:
- def test_get_settings(self):
- settings = ingest._get_settings(filename)
- assert settings["sdmId"] == expected_settings["sdmId"]
- assert settings["workflowName"] == expected_settings["workflowName"]
- assert settings["spl"] == expected_settings["spl"]
- assert settings["processingStart"] == expected_settings["processingStart"]
- assert settings["destinationDir"] == expected_settings["destinationDir"]
- assert settings["workflowDir"] == expected_settings["workflowDir"]
- assert settings["staging_area"] == expected_settings["staging_area"]
- assert settings["storage_area"] == expected_settings["storage_area"]
-
- def test_check_ingest_type(self):
- arg_type = "calibration"
- arg_type2 = "image"
-
- check = ingest.check_ingest_type(arg_type, expected_settings)
- assert check is True
-
- check2 = ingest.check_ingest_type(arg_type2, expected_settings)
- assert check2 is False
-
- def test_parser(self):
- parser = ingest.arg_parser()
- assert isinstance(parser, argparse.ArgumentParser)
-
- def test_main_calibration(self):
- args.calibration = [filename]
-
- with patch("argparse.ArgumentParser.parse_args", MagicMock(return_value=args)) as mock_args:
- with patch(
- "ingest_envoy.launchers.IngestCalibrationLauncher.launch_ingestion"
- ) as cal_ingest:
- ingest.main()
- assert cal_ingest.call_count == 1
-
- # reset for other testing
- args.calibration = None
diff --git a/apps/cli/executables/pexable/ingest_envoy/test/test_launchers.py b/apps/cli/executables/pexable/ingest_envoy/test/test_launchers.py
deleted file mode 100644
index a734a8fec..000000000
--- a/apps/cli/executables/pexable/ingest_envoy/test/test_launchers.py
+++ /dev/null
@@ -1,53 +0,0 @@
-"""
-Tests for ingest_envoy.launchers
-"""
-from unittest.mock import patch
-
-import pytest
-
-from ingest_envoy.launchers import IngestCalibrationLauncher
-
-parameters = {
- "sdmId": "16B-069_sb32814386_1_001.57685.66193635417",
- "workflowName": "std_calibration",
- "spl": "uid://evla/execblock/48ba4c9d-d7c7-4a8f-9803-1115cd52459b",
- "processingStart": "2021_07_06T21_50_48",
- "destinationDir": "/lustre/aoc/cluster/pipeline/docker/workspaces/spool/tmp576dknjp",
- "workflowDir": "tmp576dknjp",
- "staging_area": "/lustre/aoc/cluster/pipeline/docker/workspaces/staging",
- "storage_area": "/lustre/aoc/cluster/pipeline/docker/workspaces/storage",
-}
-
-
-class TestIngestCalibrationLauncher:
- @pytest.mark.skip("Skip until manifest builder is complete")
- @patch("ingest_envoy.ingestion_manifest.IngestionManifest.create")
- @patch("subprocess.run")
- def test_launch_ingestion(self, mock_run, mock_manifest):
- IngestCalibrationLauncher(parameters).launch_ingestion()
- assert mock_run.call_count == 2
- assert mock_manifest.call_count == 1
-
- @patch("subprocess.run")
- def test_run_ingest(self, mock_run):
- IngestCalibrationLauncher(parameters).run_ingest()
- assert mock_run.call_count == 1
-
- @pytest.mark.skip("Skip until manifest builder is complete")
- @patch("ingest_envoy.ingestion_manifest.IngestionManifest.create")
- @patch("subprocess.run")
- def test_prepare_for_ingest(self, mock_run, mock_manifest):
- IngestCalibrationLauncher(parameters).prepare_for_ingest()
- assert mock_run.call_count == 1
- assert mock_manifest.call_count == 1
-
- @patch("subprocess.run")
- def test_run_collection_script(self, mock_run):
- IngestCalibrationLauncher(parameters).run_collection_script()
- assert mock_run.call_count == 1
-
- @pytest.mark.skip("Skip until manifest builder is complete")
- @patch("ingest_envoy.ingestion_manifest.IngestionManifest.create")
- def test_create_manifest(self, mock_manifest):
- IngestCalibrationLauncher(parameters).create_manifest()
- assert mock_manifest.call_count == 1
diff --git a/apps/cli/executables/pexable/ingest_envoy/test/test_solicitor.py b/apps/cli/executables/pexable/ingest_envoy/test/test_solicitor.py
deleted file mode 100644
index d7dd0fd19..000000000
--- a/apps/cli/executables/pexable/ingest_envoy/test/test_solicitor.py
+++ /dev/null
@@ -1,51 +0,0 @@
-"""
-Tests for solicitor.py
-"""
-from ingest_envoy.solicitor import Solicitor
-
-solicitor = Solicitor("test/input_files/test-metadata.json")
-expected_metadata = {
- "fileSetIds": "16B-069_sb32814386_1_001.57685.66193635417",
- "workflowName": "std_calibration",
- "systemId": "2",
- "creationTime": "2021-07-06T21:50:48",
- "productLocator": "uid://evla/execblock/48ba4c9d-d7c7-4a8f-9803-1115cd52459b",
- "projectMetadata": {
- "projectCode": "16B-069",
- "title": "JVLA monitoring of an in-progress extreme scattering event",
- "startTime": "57685.661952546296",
- "observer": "Keith Bannister",
- },
- "destinationDirectory": "/lustre/aoc/cluster/pipeline/docker/workspaces/spool/tmp576dknjp",
-}
-
-
-class TestSolicitor:
- def test_solicit_contents(self):
- metadata = solicitor.solicit_contents()
- assert metadata == expected_metadata
-
- def test_solicit_workflow_directory_name(self):
- expected_workflow_dir_name = "tmp576dknjp"
-
- name = solicitor.solicit_workflow_directory_name()
- assert name == expected_workflow_dir_name
-
- def test_solicit_processing_creation_time(self):
- expected_corrected_time = "2021_07_06T21_50_48"
-
- time_string = solicitor.solicit_processing_creation_time()
- assert time_string == expected_corrected_time
-
- def test_solicit_parameters(self):
- expected_parameters = {
- "sdmId": "16B-069_sb32814386_1_001.57685.66193635417",
- "workflowName": "std_calibration",
- "spl": "uid://evla/execblock/48ba4c9d-d7c7-4a8f-9803-1115cd52459b",
- "processingStart": "2021_07_06T21_50_48",
- "destinationDir": "/lustre/aoc/cluster/pipeline/docker/workspaces/spool/tmp576dknjp",
- "workflowDir": "tmp576dknjp",
- }
-
- parameters = solicitor.solicit_parameters()
- assert parameters == expected_parameters
diff --git a/docker.properties b/docker.properties
index 87ef477da..d6238b371 100644
--- a/docker.properties
+++ b/docker.properties
@@ -35,12 +35,6 @@ edu.nrao.archive.workflow.config.DeliverySettings.nraoDownloadDirectory = /tmp/d
edu.nrao.archive.workflow.config.DeliverySettings.nraoDownloadUrl = http://localhost:4444/dl
-#
-# Ingestion Settings
-#
-edu.nrao.archive.workspaces.IngestionSettings.stagingDirectory = /lustre/aoc/cluster/pipeline/docker/workspaces/staging
-edu.nrao.archive.workspaces.IngestionSettings.storageDirectory = /lustre/aoc/cluster/pipeline/docker/workspaces/storage
-
#
# Standard Calibration Settings
#
diff --git a/schema/versions/a7c2b4682aae_add_workflow_creation_time_to_metadata_.py b/schema/versions/a7c2b4682aae_add_workflow_creation_time_to_metadata_.py
deleted file mode 100644
index 4bd0d383e..000000000
--- a/schema/versions/a7c2b4682aae_add_workflow_creation_time_to_metadata_.py
+++ /dev/null
@@ -1,162 +0,0 @@
-"""add workflow creation time to metadata.json
-
-Revision ID: a7c2b4682aae
-Revises: 758525350770
-Create Date: 2021-07-07 15:42:31.380435
-
-"""
-from alembic import op
-import sqlalchemy as sa
-
-
-# revision identifiers, used by Alembic.
-revision = "a7c2b4682aae"
-down_revision = "758525350770"
-branch_labels = None
-depends_on = None
-
-
-def upgrade():
- cal_content = """{
- "fileSetIds": "{{sdmId}}",
- "workflowName": "std_calibration",
- "systemId": "{{request_id}}",
- "creationTime": "{{created_at}}",
- "productLocator": "{{product_locator}}",
- "projectMetadata": {
- "projectCode": "{{projectCode}}",
- "title": "{{title}}",
- "startTime": "{{startTime}}",
- "observer": "{{observer}}"
- },
- "destinationDirectory": "{{root_directory}}/{{relative_path}}"
-}
- """
-
- cms_content = """{
- "fileSetIds": "{{sdmId}}",
- "workflowName": "std_cms_imaging",
- "systemId": "{{request_id}}",
- "creationTime": "{{created_at}}",
- "productLocator": "{{product_locator}}",
- "projectMetadata": {
- "projectCode": "{{projectCode}}",
- "title": "{{title}}",
- "startTime": "{{startTime}}",
- "observer": "{{observer}}"
- },
- "destinationDirectory": "{{root_directory}}/{{relative_path}}",
- "calibrationSourceDirectory":"{{cms_path}}",
- "cmsName":"{{sdmId}}.ms"
-}
-
- """
-
- condor_content = """executable = ingest_cal.sh
-arguments = metadata.json
-
-output = ingest.out
-error = ingest.err
-log = condor.log
-
-SBIN_PATH = /lustre/aoc/cluster/pipeline/$ENV(CAPO_PROFILE)/workspaces/sbin
-should_transfer_files = yes
-transfer_input_files = $(SBIN_PATH)/conveyor, $(SBIN_PATH)/ingest_envoy, $(SBIN_PATH)/ingest, $(SBIN_PATH)/calibration-table-collector.sh, ./metadata.json
-
-getenv = True
-environment = "CAPO_PATH=/home/casa/capo"
-
-queue
-
-"""
-
- op.execute(
- f"""
- UPDATE workflow_templates
- SET content = E'{cal_content}' WHERE filename='metadata.json' AND workflow_name='std_calibration'
- """
- )
- op.execute(
- f"""
- UPDATE workflow_templates
- SET content = E'{cms_content}' WHERE filename='metadata.json' AND workflow_name='std_cms_imaging'
- """
- )
- op.execute(
- f"""
- UPDATE workflow_templates
- SET content = E'{condor_content}' WHERE filename='ingest_cal.condor'
- """
- )
-
-
-def downgrade():
- old_cal_content = """{
- "fileSetIds": "{{sdmId}}",
- "workflowName": "std_calibration",
- "systemId": "{{request_id}}",
- "productLocator": "{{product_locator}}",
- "projectMetadata": {
- "projectCode": "{{projectCode}}",
- "title": "{{title}}",
- "startTime": "{{startTime}}",
- "observer": "{{observer}}"
- },
- "destinationDirectory": "{{root_directory}}/{{relative_path}}"
-}
- """
-
- old_cms_content = """{
- "fileSetIds": "{{sdmId}}",
- "workflowName": "std_cms_imaging",
- "systemId": "{{request_id}}",
- "productLocator": "{{product_locator}}",
- "projectMetadata": {
- "projectCode": "{{projectCode}}",
- "title": "{{title}}",
- "startTime": "{{startTime}}",
- "observer": "{{observer}}"
- },
- "destinationDirectory": "{{root_directory}}/{{relative_path}}",
- "calibrationSourceDirectory":"{{cms_path}}",
- "cmsName":"{{sdmId}}.ms"
-}
-
- """
-
- old_condor_content = """executable = ingest_cal.sh
-arguments = metadata.json
-
-output = ingest.out
-error = ingest.err
-log = condor.log
-
-SBIN_PATH = /lustre/aoc/cluster/pipeline/$ENV(CAPO_PROFILE)/workspaces/sbin
-should_transfer_files = yes
-transfer_input_files = $(SBIN_PATH)/conveyor, $(SBIN_PATH)/ingest_envoy, $(SBIN_PATH)/calibration-table-collector.sh, ./metadata.json
-
-getenv = True
-environment = "CAPO_PATH=/home/casa/capo"
-
-queue
-
- """
-
- op.execute(
- f"""
- UPDATE workflow_templates
- SET content = E'{old_cal_content}' WHERE filename='metadata.json' AND workflow_name='std_calibration'
- """
- )
- op.execute(
- f"""
- UPDATE workflow_templates
- SET content = E'{old_cms_content}' WHERE filename='metadata.json' AND workflow_name='std_cms_imaging'
- """
- )
- op.execute(
- f"""
- UPDATE workflow_templates
- SET content = E'{old_condor_content}' WHERE filename='ingest_cal.condor'
- """
- )
--
GitLab