Merge branch 'workflows_oracle_updoot' into '2.8.2.1-DEVELOMENT'

Added instantclient to the curator condor file for CV nodes

See merge request !1537

shared/workspaces/alembic/versions/49b7c8150e72_workflows_oracle_update.py

+"""workflows oracle update
+
+Revision ID: 49b7c8150e72
+Revises: f2a76d224984
+Create Date: 2023-11-22 14:26:55.355861
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = '49b7c8150e72'
+down_revision = 'f2a76d224984'
+branch_labels = None
+depends_on = None
+
+
+# Add instantclient_21_1 to the path for CV nodes
+old_curator_condor = """executable = curator.sh
+arguments = metadata.json {{curator_type}}
+
+output = curator.out
+error = curator.err
+log = condor.log
+
+should_transfer_files = NO
++WantIOProxy = True
+request_memory = {{ramInGb}}
+getenv = True
+environment = "CAPO_PATH=/home/casa/capo"
+requirements = HasLustre == True
+
+queue
+
+"""
+
+new_curator_condor = """executable = curator.sh
+arguments = metadata.json {{curator_type}}
+
+output = curator.out
+error = curator.err
+log = condor.log
+
+should_transfer_files = NO
++WantIOProxy = True
+request_memory = {{ramInGb}}
+{{^remote-cv}}
+getenv = True
+environment = "CAPO_PATH=/home/casa/capo"
+
+requirements = HasLustre == True
+{{/remote-cv}}
+{{#remote-cv}}
+environment = "CAPO_PATH=. CAPO_PROFILE={{profile}} ORACLE_HOME=/home/ssa/share/oracle/instantclient_21_1 LD_LIBRARY_PATH=/home/ssa/share/oracle/instantclient_21_1 PATH=/bin:/usr/bin:$(PATH)/home/ssa/share/oracle/instantclient_21_1"
+
+requirements = HasLustre == True && (CVPOST == True)
++partition = "CVPOST"
+{{/remote-cv}}
+
+queue
+
+"""
+
+
+def upgrade():
+    op.execute(
+        f"""
+        UPDATE workflow_templates
+        SET content=E'{new_curator_condor}'
+        WHERE filename='curator.condor'
+        """
+    )
+
+    # Use instantclient_21_1 in the other templates
+    op.execute(
+        f"""
+        UPDATE workflow_templates
+        SET content= regexp_replace(convert_from(content, 'utf-8'), E'instantclient_12_1', E'instantclient_21_1', 'g')::bytea
+        WHERE filename='download.condor' OR filename='ingest_cal.condor'
+        """
+    )
+
+
+def downgrade():
+    op.execute(
+        f"""
+        UPDATE workflow_templates
+        SET content=E'{old_curator_condor}'
+        WHERE filename='curator.condor'
+        """
+    )
+
+    op.execute(
+        f"""
+        UPDATE workflow_templates
+        SET content= regexp_replace(convert_from(content, 'utf-8'), E'instantclient_21_1', E'instantclient_12_1', 'g')::bytea
+        WHERE filename='download.condor' OR filename='ingest_cal.condor'
+        """
+    )