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Commit 7e5424da authored by Charlotte Hausman's avatar Charlotte Hausman
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fix single image carta crashing

parent cb53de56
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1 merge request!497fix single image carta crashing
Pipeline #2858 passed
......@@ -68,28 +68,6 @@ def ensure_non_relative_path(location: str) -> Path:
return Path(location)
def scaffold(settings: dict):
if settings["single_image"]:
directory = settings["data_location"] / settings["image_name"]
logger.info(f"Current working directory: {os.getcwd()}")
if Path(directory).exists() and Path(directory / settings["image_name"]).is_file():
logger.info("Image file already exists! Proceeding...")
os.chdir(directory)
logger.info(f"Working directory is now {os.getcwd()}")
return
else:
logger.info(
"Image file not found. Product Fetch may still be in progress. Scaffolding structure for carta..."
)
os.mkdir(settings["image_name"])
os.chdir(directory)
os.chmod(os.getcwd(), 0o770)
# logger.info(f"Working directory is now {os.getcwd()}")
Path(directory / settings["image_name"]).touch()
os.chmod(Path(directory / settings["image_name"]), 0o770)
os.chdir(settings["data_location"])
def ensure_correct_directory(settings: dict):
directory = settings["data_location"]
logger.info(f"Current working directory: {os.getcwd()}")
......@@ -190,9 +168,7 @@ def main():
settings["image_name"] = args.image[0]
if args.single:
settings["single_image"] = True
if args.parallel:
scaffold(settings)
else:
if not args.parallel:
ensure_correct_directory(settings)
carta = CartaLauncher(settings)
......
"""fix single image carta
Revision ID: 01de4f42cf27
Revises: b3667e00ef4a
Create Date: 2021-09-13 11:39:00.808773
"""
from alembic import op
import sqlalchemy as sa
# revision identifiers, used by Alembic.
revision = "01de4f42cf27"
down_revision = "b3667e00ef4a"
branch_labels = None
depends_on = None
script_content = """#!/bin/sh
set -o errexit
export HOME=$TMPDIR
{{#need_data}}
./framework.sh -r .
chmod 770 .
cd rawdata/
../productfetcher{{product_locator}} {{^single_image}}&{{/single_image}}
.{{/need_data}}./carta_envoy {{#need_data}}--parallel{{/need_data}} {{#single_image}}--single -i {{imageName}}{{/single_image}} -d $1 -n $2 -wf $3 -r $4
{{#need_data}}wait{{/need_data}}
"""
old_content = """#!/bin/sh
set -o errexit
export HOME=$TMPDIR
{{#need_data}}
./framework.sh -r .
chmod 770 .
cd rawdata/
../productfetcher{{product_locator}} &
.{{/need_data}}./carta_envoy {{#need_data}}--parallel{{/need_data}} {{#single_image}}--single -i {{imageName}}{{/single_image}} -d $1 -n $2 -wf $3 -r $4
{{#need_data}}wait{{/need_data}}
"""
def upgrade():
op.execute(
f"""
UPDATE workflow_templates
SET content=E'{script_content}' WHERE filename='carta.sh'
"""
)
def downgrade():
op.execute(
f"""
UPDATE workflow_templates
SET content=E'{old_content}' WHERE filename='carta.sh'
"""
)
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