Merge pull request #18 in SSA/data from SSA-6324-pytest-branch3-modules-and-scodeup to main

* commit '798426a8':
  SSA-6324: fixes locking message problem discovered in SSA-6458
  SSA-6324: refactored prop setter for testability and created tests; added script to run all tests in data repo
  Remove unittest from datafetcher and migrate to pytest
  Remove unittest from test_updater.py, rely on pytest instead
  Tests work, remove src imports

set_up_project.sh

@@ -6,19 +6,18 @@
 TOP_LEVEL=/Users/jgoldste/Projects/data/
 cd $TOP_LEVEL
 
-current_env=$CONDA_DEFAULT_ENV
-if [ -z $current_env ]
+if [ -z $CONDA_DEFAULT_ENV ]
 then
   echo '>>> Updating conda environment....'
   conda env update
   echo '>>> Activating....'
   conda activate data
 else
-  echo "conda environment 'data' is active"
+  echo "conda environment '${CONDA_DEFAULT_ENV}' is active"
 fi
 
 SETUP=setup.py
-echo '>>> finding all $SETUP'
+echo ">>> looking for ${SETUP} in all modules...."
 SETUPS=$(find . -name $SETUP -exec echo '{}' \;)
 for item in $SETUPS
 do
@@ -27,8 +26,6 @@ do
   cd ${dir}
 
   python setup.py develop
-#    to_keep=$(basename -s $item)
-#    echo $to_keep
 done
 
 

test/test_all.sh

+#!/bin/bash
+
+# Set up conda environment, if necessary,
+# then in each module:
+# 1. run setup
+# 2. if there is a test/ subdirectory, execute pytest therein
+
+TOP_LEVEL=/Users/jgoldste/Projects/data/
+cd $TOP_LEVEL
+
+if [ -z $CONDA_DEFAULT_ENV ]
+then
+  echo '>>> Updating conda environment....'
+  conda env update
+  echo '>>> Activating....'
+  conda activate data
+else
+  echo "conda environment '${CONDA_DEFAULT_ENV}' is active"
+fi
+
+SETUP=setup.py
+echo ">>> looking for ${SETUP} in all modules...."
+SETUPS=$(find . -name $SETUP -exec echo '{}' \;)
+for item in $SETUPS
+do
+  dir=$(dirname $item)
+  dir=${TOP_LEVEL}${dir:1}
+  cd ${dir}
+  if [ -z $? ]
+  then
+    exit $?
+  fi
+  echo ">>> running ${SETUP} in ${dir}...."
+  python setup.py develop
+  if [ -d $dir/test ]
+  then
+    cd test
+    pytest --log-level=DEBUG --showlocals
+  fi
+done
+
+