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workspaces
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!1095
fix pims_split finish stage
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fix pims_split finish stage
pims_fixes
into
main
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Charlotte Hausman
requested to merge
pims_fixes
into
main
2 years ago
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02fd1958
fix pims_split finish stage
· 02fd1958
Charlotte Hausman
authored
2 years ago
shared/workspaces/alembic/versions/bccbfba286d7_fix_pims_finish_template.py
0 → 100644
+
84
−
0
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"""
fix pims finish template
Revision ID: bccbfba286d7
Revises: dc83011fcd2f
Create Date: 2022-10-10 09:35:56.489020
"""
from
alembic
import
op
# revision identifiers, used by Alembic.
revision
=
"
bccbfba286d7
"
down_revision
=
"
dc83011fcd2f
"
branch_labels
=
None
depends_on
=
None
fixed_condor
=
"""
executable = write_finished_file.sh
output = write_finished.out
error = write_finished.err
log = condor.log
SBIN_PATH = /lustre/aoc/cluster/pipeline/$ENV(CAPO_PROFILE)/workspaces/sbin
SPOOL_DIR = {{spool_dir}}
should_transfer_files = yes
transfer_input_files = $ENV(HOME)/.ssh/condor_transfer, nraorsync://$(SBIN_PATH)/pycapo
transfer_output_files = .job.ad
+nrao_output_files =
"
finished
"
output_destination = nraorsync://$(SPOOL_DIR)
+WantIOProxy = True
getenv = True
environment =
"
CAPO_PATH=/home/casa/capo
"
requirements = (VLASS == True) && (HasLustre == True)
+partition =
"
VLASS
"
queue
"""
old_condor
=
"""
write_finished_file.sh
output = write_finished.out
error = write_finished.err
log = condor.log
SBIN_PATH = /lustre/aoc/cluster/pipeline/$ENV(CAPO_PROFILE)/workspaces/sbin
SPOOL_DIR = {{spool_dir}}
should_transfer_files = yes
transfer_input_files = $ENV(HOME)/.ssh/condor_transfer, nraorsync://$(SBIN_PATH)/pycapo
transfer_output_files = .job.ad
+nrao_output_files =
"
finished
"
output_destination = nraorsync://$(SPOOL_DIR)
+WantIOProxy = True
getenv = True
environment =
"
CAPO_PATH=/home/casa/capo
"
requirements = (VLASS == True) && (HasLustre == True)
+partition =
"
VLASS
"
queue
"""
def
upgrade
():
op
.
execute
(
f
"""
UPDATE workflow_templates
SET content=E
'
{
fixed_condor
}
'
WHERE filename=
'
write_finished_file.condor
'
AND workflow_name=
'
pims_split
'
"""
)
def
downgrade
():
op
.
execute
(
f
"""
UPDATE workflow_templates
SET content=E
'
{
old_condor
}
'
WHERE filename=
'
write_finished_file.condor
'
AND workflow_name=
'
pims_split
'
"""
)
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