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Commit 21b11706 authored by Daniel Nemergut's avatar Daniel Nemergut
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No longer transferring files into the container, running from /users/vlapipe directly

parent fa3bf754
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1 merge request!1477Mark4 import script move
Pipeline #12275 passed
This commit is part of merge request !1477. Comments created here will be created in the context of that merge request.
......@@ -24,15 +24,12 @@ output = import.out
error = import.err
log = condor.log
SBIN_PATH = /lustre/aoc/cluster/pipeline/$ENV(CAPO_PROFILE)/workspaces/sbin
SPOOL_DIR = {{spool_dir}}
should_transfer_files = yes
transfer_input_files = $ENV(HOME)/.ssh/condor_transfer, nraorsync://$(SBIN_PATH)/pycapo, $(SBIN_PATH)/mark4_import
should_transfer_files = NO
+WantIOProxy = True
request_memory = {{ramInGb}}
getenv = True
environment = "CAPO_PATH=/home/casa/capo"
requirements = HasLustre == True
queue
......@@ -41,7 +38,9 @@ queue
mk_four_import_sh = """#!/bin/sh
set -o errexit
./mark4_import
BIN_PATH=/users/vlapipe/workflows/$CAPO_PROFILE/bin
${BIN_PATH}/mark4_import
"""
......@@ -49,7 +48,7 @@ set -o errexit
def upgrade():
op.execute(
f"""
INSERT INTO workflows (workflow_name) VALUES (E'{wf_name}')
INSERT INTO workflows (workflow_name, requires_lustre) VALUES (E'{wf_name}', true)
"""
)
......
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