Mark4 import script move
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1 unresolved thread
Moved the mark4 import script where it can exist in the container. I manually updated the workflow templates on dev and test, this is for when it goes to prod.
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assigned to @dnemergu
24 24 error = import.err 25 25 log = condor.log 26 26 27 BIN_PATH = $ENV(HOME)/workflows/$ENV(CAPO_PROFILE)/bin 28 27 SBIN_PATH = /lustre/aoc/cluster/pipeline/$ENV(CAPO_PROFILE)/workspaces/sbin 29 28 SPOOL_DIR = {{spool_dir}} 30 29 should_transfer_files = yes 31 transfer_input_files = $ENV(HOME)/.ssh/condor_transfer, nraorsync://$(SBIN_PATH)/pycapo, $(BIN_PATH)/mark4_import 30 transfer_input_files = $ENV(HOME)/.ssh/condor_transfer, nraorsync://$(SBIN_PATH)/pycapo, $(SBIN_PATH)/mark4_import 
Accessing it from the container was precisely the issue. The script originally existed at
/users/vlapipe/workflows/$ENV(CAPO_PROFILE)/binbut that wasn't in lustre nor mounted to the container. Running it from here does work but sounds like it probably wasn't the correct place.I just saw this directory was already mounted and went with it but I'm up for moving it anywhere as long as the container can run it.
changed this line in version 2 of the diff
added 1 commit
- 21b11706 - No longer transferring files into the container, running from /users/vlapipe directly
mentioned in commit 8d542fbb
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