Mark4 import script move

Moved the mark4 import script where it can exist in the container. I manually updated the workflow templates on dev and test, this is for when it goes to prod.

shared/workspaces/alembic/versions/61cbcd1d83f7_mark4_import_workflow.py

@@ -24,11 +24,10 @@ output = import.out
 error = import.err
 log = condor.log
 
-BIN_PATH = $ENV(HOME)/workflows/$ENV(CAPO_PROFILE)/bin
 SBIN_PATH = /lustre/aoc/cluster/pipeline/$ENV(CAPO_PROFILE)/workspaces/sbin
 SPOOL_DIR = {{spool_dir}}
 should_transfer_files = yes
-transfer_input_files = $ENV(HOME)/.ssh/condor_transfer, nraorsync://$(SBIN_PATH)/pycapo, $(BIN_PATH)/mark4_import
+transfer_input_files = $ENV(HOME)/.ssh/condor_transfer, nraorsync://$(SBIN_PATH)/pycapo, $(SBIN_PATH)/mark4_import
 +WantIOProxy = True
 
 request_memory = {{ramInGb}}

[Charlotte Hausman]

This actually works? This isn't a pex

[Charlotte Hausman]

also if accessing the script from a container is the issue, this workflow really doesn't need to be portable like this. We can lock it run on lustre directly like the calibrations are

[Daniel Nemergut]

Accessing it from the container was precisely the issue. The script originally existed at /users/vlapipe/workflows/$ENV(CAPO_PROFILE)/bin but that wasn't in lustre nor mounted to the container. Running it from here does work but sounds like it probably wasn't the correct place.

I just saw this directory was already mounted and went with it but I'm up for moving it anywhere as long as the container can run it.

[Daniel Nemergut]

This should be happy now. I manually updated it on dev and it ran with expected chatter in the logs.